IL_8C3A_155

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8C3A|1|AS|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_155 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.0965

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8C3A|1|AS|A|12
8C3A|1|AS|U|13
8C3A|1|AS|C|14
*
8C3A|1|AU|G|144
8C3A|1|AU|U|145

Current chains

Chain AS

25S

Chain AU

5.8S

Nearby chains

Chain BC

60S ribosomal protein L8

Chain BI

60S ribosomal protein L15-A

Chain BS

60S ribosomal protein L25