IL_8C3A_184

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8C3A|1|AS|A|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_184 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.132

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8C3A|1|AS|A|824
8C3A|1|AS|U|825
*
8C3A|1|AS|A|891
8C3A|1|AS|A|892
8C3A|1|AS|U|893

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CB

60S ribosomal protein L34-B

Chain CK

60S ribosomal protein L43-A