IL_8C3A_193

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8C3A|1|AS|G|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_193 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0536

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8C3A|1|AS|A|979
8C3A|1|AS|G|980
8C3A|1|AS|U|981
*
8C3A|1|AS|A|1095
8C3A|1|AS|U|1096

Current chains

Chain AS

25S

Nearby chains

Chain BB

60S ribosomal protein L7-A

Chain BO

60S ribosomal protein L21-A

Chain BW

60S ribosomal protein L29