IL_8C3A_217

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUG*CUG

Length

7 nucleotides

Bulged bases

8C3A|1|AS|U|1395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_217 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.0356

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8C3A|1|AS|U|1394
8C3A|1|AS|U|1395
8C3A|1|AS|U|1396
8C3A|1|AS|G|1397
*
8C3A|1|AS|C|1406
8C3A|1|AS|U|1407
8C3A|1|AS|G|1408

Current chains

Chain AS

25S

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain BA

60S ribosomal protein L6

Chain BZ

60S ribosomal protein L32