IL_8C3A_235

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_235 not in the Motif Atlas

Geometric match to IL_5TBW_076

Geometric discrepancy: 0.0826

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8C3A|1|AS|G|1894
8C3A|1|AS|G|1895
8C3A|1|AS|A|1896
8C3A|1|AS|A|1897
*
8C3A|1|AS|U|2314
8C3A|1|AS|C|2315

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L23-A