IL_8C3A_242

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8C3A|1|AS|C|2175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_242 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0485

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8C3A|1|AS|C|2174
8C3A|1|AS|C|2175
8C3A|1|AS|A|2176
8C3A|1|AS|G|2177
*
8C3A|1|AS|C|2223
8C3A|1|AS|G|2224

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CM

Small subunit ribosomal RNA; SSU rRNA