IL_8C3A_250

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8C3A|1|AS|A|2375, 8C3A|1|AS|C|2955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_250 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0627

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|AS|G|2374
8C3A|1|AS|A|2375
8C3A|1|AS|A|2376
*
8C3A|1|AS|U|2953
8C3A|1|AS|A|2954
8C3A|1|AS|C|2955
8C3A|1|AS|C|2956

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22