IL_8C3A_268

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_268 not in the Motif Atlas

Homologous match to IL_8C3A_118

Geometric discrepancy: 0.0533

The information below is about IL_8C3A_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8C3A|1|AS|C|2861
8C3A|1|AS|A|2862
8C3A|1|AS|U|2863
*
8C3A|1|AS|G|2884
8C3A|1|AS|C|2885
8C3A|1|AS|G|2886

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L23-A