IL_8C3A_317

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_317 not in the Motif Atlas

Geometric match to IL_5TBW_115

Geometric discrepancy: 0.1334

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8C3A|1|B|A|204
8C3A|1|B|U|205
8C3A|1|B|U|206
*
8C3A|1|B|A|255
8C3A|1|B|C|256
8C3A|1|B|U|257

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8