IL_8C3A_389

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C3A_389 not in the Motif Atlas

Homologous match to IL_8C3A_478

Geometric discrepancy: 0.0655

The information below is about IL_8C3A_478

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8C3A|1|B|U|1656
8C3A|1|B|G|1657
8C3A|1|B|A|1658
8C3A|1|B|G|1659
*
8C3A|1|B|C|1716
8C3A|1|B|A|1717
8C3A|1|B|A|1718
8C3A|1|B|A|1719

Current chains

Chain B

18S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain I

40S ribosomal protein S6

Chain K

40S ribosomal protein S8