IL_8C3A_461

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUACU*AGAG

Length

9 nucleotides

Bulged bases

8C3A|1|CM|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13404.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8C3A|1|CM|C|1324
8C3A|1|CM|U|1325
8C3A|1|CM|A|1326
8C3A|1|CM|C|1327
8C3A|1|CM|U|1328
*
8C3A|1|CM|A|1368
8C3A|1|CM|G|1369
8C3A|1|CM|A|1370
8C3A|1|CM|G|1371

Current chains

Chain CM

18S

Nearby chains

Chain DD

40S ribosomal protein S16

Chain DE

40S ribosomal protein S17-B

Chain DH

Ribosomal protein S10

Chain DT

Guanine nucleotide-binding protein subunit beta-like protein