IL_8C3A_465

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76236.1

Basepair signature

cWW-tWH-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|C|1375
8C3A|1|CM|U|1376
8C3A|1|CM|A|1377
*
8C3A|1|CM|U|1393
8C3A|1|CM|G|1394
8C3A|1|CM|G|1395
8C3A|1|CM|A|1396
8C3A|1|CM|A|1397
8C3A|1|CM|G|1398

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DE

40S ribosomal protein S17-B

Chain DT

Guanine nucleotide-binding protein subunit beta-like protein