IL_8C6J_011

3D structure

PDB id

8C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human spliceosomal PM5 C* complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCG*CAG

Length

7 nucleotides

Bulged bases

8C6J|1|6|C|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C6J_011 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2192

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8C6J|1|6|C|4
8C6J|1|6|U|5
8C6J|1|6|C|6
8C6J|1|6|G|7
*
8C6J|1|6|C|14
8C6J|1|6|A|15
8C6J|1|6|G|16

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain A

Pre-mRNA-processing-splicing factor 8

Chain L

Protein BUD31 homolog

Chain o

Pre-mRNA-processing factor 17