IL_8C6J_013
3D structure
- PDB id
- 8C6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human spliceosomal PM5 C* complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 8C6J|1|6|A|73, 8C6J|1|6|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C6J_013 not in the Motif Atlas
- Geometric match to IL_8VTW_097
- Geometric discrepancy: 0.0938
- The information below is about IL_8VTW_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8C6J|1|6|C|61
8C6J|1|6|C|62
*
8C6J|1|6|G|72
8C6J|1|6|A|73
8C6J|1|6|U|74
8C6J|1|6|G|75
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain E
- PM5 5' Exon
- Chain G
- Protein FAM32A
- Chain I
- PM5 Intron
- Chain K
- SNW domain-containing protein 1
- Chain M
- Pre-mRNA-splicing factor RBM22
- Chain O
- Cell division cycle 5-like protein
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain S
- Crooked neck-like protein 1
- Chain z
- Splicing regulator SDE2
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