IL_8C83_055

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8C83|1|2|C|1637, 8C83|1|2|A|1766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_055 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1546

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8C83|1|2|C|1636
8C83|1|2|C|1637
8C83|1|2|G|1638
*
8C83|1|2|C|1764
8C83|1|2|A|1765
8C83|1|2|A|1766
8C83|1|2|G|1767

Current chains

Chain 2

18S ribosomal RNA

Nearby chains