IL_8C83_056

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_056 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1383

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C83|1|2|G|1638
8C83|1|2|C|1639
8C83|1|2|C|1640
8C83|1|2|C|1641
*
8C83|1|2|G|1760
8C83|1|2|U|1761
8C83|1|2|A|1762
8C83|1|2|A|1763
8C83|1|2|C|1764

Current chains

Chain 2

18S ribosomal RNA

Nearby chains