IL_8C83_058

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8C83|1|2|A|1756

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_058 not in the Motif Atlas

Geometric match to IL_1DUQ_001

Geometric discrepancy: 0.3041

The information below is about IL_1DUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

8C83|1|2|C|1644
8C83|1|2|G|1645
8C83|1|2|C|1646
8C83|1|2|U|1647
*
8C83|1|2|A|1753
8C83|1|2|A|1754
8C83|1|2|A|1755
8C83|1|2|A|1756
8C83|1|2|G|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A