IL_8C83_060

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_060 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1277

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8C83|1|2|C|1653
8C83|1|2|G|1654
8C83|1|2|A|1655
8C83|1|2|U|1656
*
8C83|1|2|A|1744
8C83|1|2|G|1745
8C83|1|2|A|1746
8C83|1|2|G|1747

Current chains

Chain 2

18S ribosomal RNA

Nearby chains