IL_8C83_066
3D structure
- PDB id
- 8C83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C83_066 not in the Motif Atlas
- Geometric match to IL_4V88_474
- Geometric discrepancy: 0.1642
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8C83|1|2|A|1678
8C83|1|2|G|1679
8C83|1|2|G|1680
8C83|1|2|A|1681
8C83|1|2|U|1682
*
8C83|1|2|A|1719
8C83|1|2|G|1720
8C83|1|2|A|1721
8C83|1|2|A|1722
8C83|1|2|U|1723
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-B
- Chain x
- OTU domain-containing protein 2
Coloring options: