IL_8C83_067

3D structure

PDB id

8C83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C83_067 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.3023

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8C83|1|2|U|1688
8C83|1|2|A|1689
8C83|1|2|G|1690
*
8C83|1|2|C|1711
8C83|1|2|A|1712
8C83|1|2|G|1713

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain x

OTU domain-containing protein 2