IL_8C8X_015

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8C8X|1|A|G|801, 8C8X|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_015 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.2174

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8C8X|1|A|G|674
8C8X|1|A|A|675
8C8X|1|A|A|676
8C8X|1|A|A|677
8C8X|1|A|C|678
*
8C8X|1|A|G|799
8C8X|1|A|A|800
8C8X|1|A|G|801
8C8X|1|A|A|802
8C8X|1|A|U|803
8C8X|1|A|A|804
8C8X|1|A|G|805
8C8X|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15