IL_8C8X_031

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

8C8X|1|A|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_031 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1435

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8C8X|1|A|C|998
8C8X|1|A|U|999
8C8X|1|A|A|1000
8C8X|1|A|A|1001
8C8X|1|A|G|1002
*
8C8X|1|A|C|1153
8C8X|1|A|G|1154
8C8X|1|A|A|1155
8C8X|1|A|A|1156
8C8X|1|A|G|1157

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L20

Chain Z

50S ribosomal protein L30