IL_8C8X_066

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8C8X|1|A|A|1801, 8C8X|1|A|C|1816, 8C8X|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_066 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1657

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8C8X|1|A|U|1798
8C8X|1|A|G|1799
8C8X|1|A|C|1800
8C8X|1|A|A|1801
8C8X|1|A|A|1802
8C8X|1|A|A|1803
8C8X|1|A|C|1804
*
8C8X|1|A|G|1813
8C8X|1|A|G|1814
8C8X|1|A|A|1815
8C8X|1|A|C|1816
8C8X|1|A|G|1817
8C8X|1|A|U|1818
8C8X|1|A|A|1819
8C8X|1|A|U|1820
8C8X|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2