IL_8C8X_080

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8C8X|1|A|U|2111, 8C8X|1|A|U|2118, 8C8X|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_080 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5923

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8C8X|1|A|G|2110
8C8X|1|A|U|2111
8C8X|1|A|G|2112
8C8X|1|A|U|2113
8C8X|1|A|A|2114
8C8X|1|A|G|2115
8C8X|1|A|G|2116
8C8X|1|A|A|2117
8C8X|1|A|U|2118
8C8X|1|A|A|2119
8C8X|1|A|G|2120
*
8C8X|1|A|C|2178
8C8X|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains