IL_8C8X_109

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGUUGAAG*UGGAGGACC

Length

17 nucleotides

Bulged bases

8C8X|1|A|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_109 not in the Motif Atlas

Geometric match to IL_4WF9_119

Geometric discrepancy: 0.337

The information below is about IL_4WF9_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00087.1

Basepair signature

cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8C8X|1|A|G|700
8C8X|1|A|G|701
8C8X|1|A|U|702
8C8X|1|A|U|703
8C8X|1|A|G|704
8C8X|1|A|A|705
8C8X|1|A|A|706
8C8X|1|A|G|707
*
8C8X|1|A|U|724
8C8X|1|A|G|725
8C8X|1|A|G|726
8C8X|1|A|A|727
8C8X|1|A|G|728
8C8X|1|A|G|729
8C8X|1|A|A|730
8C8X|1|A|C|731
8C8X|1|A|C|732

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2