IL_8C8X_114

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8X_114 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.215

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8C8X|1|A|U|1851
8C8X|1|A|U|1852
8C8X|1|A|A|1853
8C8X|1|A|A|1854
8C8X|1|A|U|1855
8C8X|1|A|U|1856
8C8X|1|A|G|1857
8C8X|1|A|A|1858
8C8X|1|A|U|1859
8C8X|1|A|G|1860
*
8C8X|1|A|U|1882
8C8X|1|A|U|1883
8C8X|1|A|G|1884
8C8X|1|A|A|1885
8C8X|1|A|U|1886
8C8X|1|A|C|1887
8C8X|1|A|G|1888
8C8X|1|A|A|1889
8C8X|1|A|A|1890
8C8X|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains