IL_8C8Y_006

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1351

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C8Y|1|A|G|188
8C8Y|1|A|G|189
8C8Y|1|A|A|190
8C8Y|1|A|A|191
8C8Y|1|A|C|192
8C8Y|1|A|U|193
8C8Y|1|A|G|194
*
8C8Y|1|A|C|201
8C8Y|1|A|U|202
8C8Y|1|A|A|203
8C8Y|1|A|A|204
8C8Y|1|A|G|205
8C8Y|1|A|U|206
8C8Y|1|A|A|207
8C8Y|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28