3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8C8Y|1|A|G|801, 8C8Y|1|A|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C8Y_016 not in the Motif Atlas
Homologous match to IL_7RQB_018
Geometric discrepancy: 0.3614
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8C8Y|1|A|G|674
8C8Y|1|A|A|675
8C8Y|1|A|A|676
8C8Y|1|A|A|677
8C8Y|1|A|C|678
*
8C8Y|1|A|G|799
8C8Y|1|A|A|800
8C8Y|1|A|G|801
8C8Y|1|A|A|802
8C8Y|1|A|U|803
8C8Y|1|A|A|804
8C8Y|1|A|G|805
8C8Y|1|A|C|806

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4

Coloring options:


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