IL_8C8Y_016

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8C8Y|1|A|G|801, 8C8Y|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.3614

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8C8Y|1|A|G|674
8C8Y|1|A|A|675
8C8Y|1|A|A|676
8C8Y|1|A|A|677
8C8Y|1|A|C|678
*
8C8Y|1|A|G|799
8C8Y|1|A|A|800
8C8Y|1|A|G|801
8C8Y|1|A|A|802
8C8Y|1|A|U|803
8C8Y|1|A|A|804
8C8Y|1|A|G|805
8C8Y|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4