IL_8C8Y_074

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

8C8Y|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_074 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5803

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8C8Y|1|A|G|2124
8C8Y|1|A|G|2125
8C8Y|1|A|A|2126
8C8Y|1|A|G|2127
8C8Y|1|A|G|2128
*
8C8Y|1|A|C|2160
8C8Y|1|A|C|2161
8C8Y|1|A|G|2162
8C8Y|1|A|A|2163
8C8Y|1|A|C|2164
8C8Y|1|A|C|2165
8C8Y|1|A|U|2166
8C8Y|1|A|U|2167
8C8Y|1|A|G|2168
8C8Y|1|A|A|2169
8C8Y|1|A|A|2170
8C8Y|1|A|A|2171
8C8Y|1|A|U|2172
8C8Y|1|A|A|2173
8C8Y|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains