IL_8C8Y_080

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8C8Y|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_080 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1289

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8C8Y|1|A|C|2636
8C8Y|1|A|U|2637
8C8Y|1|A|G|2638
8C8Y|1|A|A|2639
8C8Y|1|A|G|2640
*
8C8Y|1|A|C|2774
8C8Y|1|A|G|2775
8C8Y|1|A|A|2776
8C8Y|1|A|G|2777
8C8Y|1|A|A|2778
8C8Y|1|A|U|2779
8C8Y|1|A|G|2780
8C8Y|1|A|A|2781
8C8Y|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13