IL_8C8Y_081

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Y_081 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.3176

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C8Y|1|A|C|2652
8C8Y|1|A|U|2653
8C8Y|1|A|A|2654
8C8Y|1|A|G|2655
8C8Y|1|A|U|2656
8C8Y|1|A|A|2657
8C8Y|1|A|C|2658
*
8C8Y|1|A|G|2663
8C8Y|1|A|G|2664
8C8Y|1|A|A|2665
8C8Y|1|A|C|2666
8C8Y|1|A|C|2667
8C8Y|1|A|G|2668

Current chains

Chain A

23S rRNA

Nearby chains