IL_8C8Z_006

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C8Z_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1774

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C8Z|1|A|G|188
8C8Z|1|A|G|189
8C8Z|1|A|A|190
8C8Z|1|A|A|191
8C8Z|1|A|C|192
8C8Z|1|A|U|193
8C8Z|1|A|G|194
*
8C8Z|1|A|C|201
8C8Z|1|A|U|202
8C8Z|1|A|A|203
8C8Z|1|A|A|204
8C8Z|1|A|G|205
8C8Z|1|A|U|206
8C8Z|1|A|A|207
8C8Z|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28