IL_8C90_006

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.177

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8C90|1|A|G|188
8C90|1|A|G|189
8C90|1|A|A|190
8C90|1|A|A|191
8C90|1|A|C|192
8C90|1|A|U|193
8C90|1|A|G|194
*
8C90|1|A|C|201
8C90|1|A|U|202
8C90|1|A|A|203
8C90|1|A|A|204
8C90|1|A|G|205
8C90|1|A|U|206
8C90|1|A|A|207
8C90|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains