IL_8C90_032

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8C90|1|A|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_032 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.5575

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8C90|1|A|G|1031
8C90|1|A|A|1032
8C90|1|A|U|1033
8C90|1|A|G|1034
*
8C90|1|A|C|1121
8C90|1|A|G|1122
8C90|1|A|C|1123

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA