IL_8C90_065

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C90_065 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2209

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C90|1|A|C|2652
8C90|1|A|U|2653
8C90|1|A|A|2654
8C90|1|A|G|2655
8C90|1|A|U|2656
8C90|1|A|A|2657
8C90|1|A|C|2658
*
8C90|1|A|G|2663
8C90|1|A|G|2664
8C90|1|A|A|2665
8C90|1|A|C|2666
8C90|1|A|C|2667
8C90|1|A|G|2668

Current chains

Chain A

23S rRNA

Nearby chains