IL_8C91_018

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

8C91|1|A|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C91_018 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.304

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C91|1|A|U|702
8C91|1|A|U|703
8C91|1|A|G|704
8C91|1|A|A|705
8C91|1|A|A|706
8C91|1|A|G|707
*
8C91|1|A|U|724
8C91|1|A|G|725
8C91|1|A|G|726
8C91|1|A|A|727
8C91|1|A|G|728
8C91|1|A|G|729
8C91|1|A|A|730

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2