IL_8C91_076

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

CGAAGG*UCUAAG

Length

12 nucleotides

Bulged bases

8C91|1|A|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C91_076 not in the Motif Atlas

Homologous match to IL_7A0S_108

Geometric discrepancy: 0.5238

The information below is about IL_7A0S_108

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8C91|1|A|C|1417
8C91|1|A|G|1418
8C91|1|A|A|1419
8C91|1|A|A|1420
8C91|1|A|G|1421
8C91|1|A|G|1422
*
8C91|1|A|U|1576
8C91|1|A|C|1577
8C91|1|A|U|1578
8C91|1|A|A|1579
8C91|1|A|A|1580
8C91|1|A|G|1581

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2