IL_8C92_048

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AGGAA*UCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C92_048 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3811

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8C92|1|A|A|1665
8C92|1|A|G|1666
8C92|1|A|G|1667
8C92|1|A|A|1668
8C92|1|A|A|1669
*
8C92|1|A|U|1993
8C92|1|A|C|1994
8C92|1|A|U|1995

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14