IL_8C92_051

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C92_051 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3821

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8C92|1|A|U|1720
8C92|1|A|G|1721
8C92|1|A|A|1722
8C92|1|A|G|1723
8C92|1|A|G|1724
8C92|1|A|U|1725
*
8C92|1|A|A|1735
8C92|1|A|U|1736
8C92|1|A|G|1737
8C92|1|A|G|1738
8C92|1|A|A|1739
8C92|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains