IL_8C92_053

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GCAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C92_053 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3283

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8C92|1|A|G|2049
8C92|1|A|C|2050
8C92|1|A|A|2051
8C92|1|A|A|2052
*
8C92|1|A|U|2617
8C92|1|A|G|2618
8C92|1|A|C|2619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13