IL_8C93_012

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8C93|1|A|A|504, 8C93|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_012 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.1416

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8C93|1|A|G|481
8C93|1|A|A|482
8C93|1|A|A|483
8C93|1|A|C|484
*
8C93|1|A|G|496
8C93|1|A|A|497
8C93|1|A|G|498
8C93|1|A|U|499
8C93|1|A|G|500
8C93|1|A|A|501
8C93|1|A|A|502
8C93|1|A|A|503
8C93|1|A|A|504
8C93|1|A|A|505
8C93|1|A|G|506
8C93|1|A|A|507
8C93|1|A|A|508
8C93|1|A|C|509

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24