IL_8C93_028

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

8C93|1|A|U|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_028 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.479

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8C93|1|A|G|1024
8C93|1|A|G|1025
8C93|1|A|G|1026
8C93|1|A|A|1027
8C93|1|A|A|1028
8C93|1|A|A|1029
8C93|1|A|C|1030
*
8C93|1|A|G|1124
8C93|1|A|G|1125
8C93|1|A|A|1126
8C93|1|A|A|1127
8C93|1|A|G|1128
8C93|1|A|A|1129
8C93|1|A|U|1130
8C93|1|A|G|1131
8C93|1|A|U|1132
8C93|1|A|A|1133
8C93|1|A|A|1134
8C93|1|A|C|1135
8C93|1|A|G|1136
8C93|1|A|G|1137
8C93|1|A|G|1138
8C93|1|A|G|1139
8C93|1|A|C|1140

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13