IL_8C93_042

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C93_042 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3721

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8C93|1|A|G|1473
8C93|1|A|U|1474
8C93|1|A|G|1475
8C93|1|A|U|1476
8C93|1|A|A|1477
8C93|1|A|G|1478
*
8C93|1|A|U|1513
8C93|1|A|G|1514
8C93|1|A|A|1515
8C93|1|A|G|1516
8C93|1|A|G|1517
8C93|1|A|C|1518

Current chains

Chain A

23S rRNA

Nearby chains