IL_8C94_023
3D structure
- PDB id
- 8C94 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM captures early ribosome assembly in action
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGUAG*CGAAUAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8C94_023 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.5683
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8C94|1|A|G|857
8C94|1|A|G|858
8C94|1|A|G|859
8C94|1|A|U|860
8C94|1|A|A|861
8C94|1|A|G|862
*
8C94|1|A|C|915
8C94|1|A|G|916
8C94|1|A|A|917
8C94|1|A|A|918
8C94|1|A|U|919
8C94|1|A|A|920
8C94|1|A|C|921
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
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