IL_8C94_025

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

8C94|1|A|A|910, 8C94|1|A|A|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C94_025 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.274

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

8C94|1|A|G|864
8C94|1|A|C|865
8C94|1|A|A|866
8C94|1|A|C|867
8C94|1|A|U|868
*
8C94|1|A|A|909
8C94|1|A|A|910
8C94|1|A|A|911
8C94|1|A|C|912

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA