IL_8C95_010

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8C95|1|A|A|504, 8C95|1|A|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C95_010 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.218

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8C95|1|A|G|481
8C95|1|A|A|482
8C95|1|A|A|483
8C95|1|A|C|484
*
8C95|1|A|G|496
8C95|1|A|A|497
8C95|1|A|G|498
8C95|1|A|U|499
8C95|1|A|G|500
8C95|1|A|A|501
8C95|1|A|A|502
8C95|1|A|A|503
8C95|1|A|A|504
8C95|1|A|A|505
8C95|1|A|G|506
8C95|1|A|A|507
8C95|1|A|A|508
8C95|1|A|C|509

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24