IL_8C95_040

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8C95|1|A|U|846, 8C95|1|A|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C95_040 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2904

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8C95|1|A|A|844
8C95|1|A|A|845
8C95|1|A|U|846
8C95|1|A|U|847
8C95|1|A|C|848
*
8C95|1|A|G|930
8C95|1|A|U|931
8C95|1|A|U|932
8C95|1|A|A|933
8C95|1|A|U|934

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30