IL_8C96_026

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C96_026 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1455

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8C96|1|A|U|1004
8C96|1|A|C|1005
8C96|1|A|C|1006
8C96|1|A|C|1007
8C96|1|A|A|1008
8C96|1|A|A|1009
8C96|1|A|A|1010
8C96|1|A|G|1011
*
8C96|1|A|C|1150
8C96|1|A|A|1151

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20