IL_8C96_041

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

GUU*ACUGC

Length

8 nucleotides

Bulged bases

8C96|1|A|C|2712, 8C96|1|A|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C96_041 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3431

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8C96|1|A|G|2694
8C96|1|A|U|2695
8C96|1|A|U|2696
*
8C96|1|A|A|2711
8C96|1|A|C|2712
8C96|1|A|U|2713
8C96|1|A|G|2714
8C96|1|A|C|2715

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19