IL_8C97_007

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C97_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.2693

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8C97|1|A|C|239
8C97|1|A|C|240
8C97|1|A|A|241
8C97|1|A|G|242
8C97|1|A|U|243
8C97|1|A|A|244
8C97|1|A|G|245
*
8C97|1|A|C|253
8C97|1|A|G|254
8C97|1|A|A|255
8C97|1|A|A|256
8C97|1|A|C|257
8C97|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains